BrightEyes ERC Consolidator Grant 2018
Fluorescence single-molecule (SM) detection techniques have the potential to provide insights into the complex functions, structures and interactions of individual, specifically labelled biomolecules. However, current SM techniques work properly only when the biomolecule is observed in controlled environments, e.g., immobilized on a glass surface. Observation of biomolecular processes in living (multi)cellular environments – which is fundamental for sound biological conclusion – always comes with a price, such as invasiveness, limitations in the accessible information and constraints in the spatial and temporal scales. The overall objective of the BrightEyes project is to break the above limitations by creating a novel SM approach compatible with the state-of-the-art biomolecule-labelling protocols, able to track a biomolecule deep inside (multi)cellular environments – with temporal resolution in the microsecond scale, and with hundreds of micrometres tracking range – and simultaneously observe its structural changes, its nano- and micro-environments. Specifically, by exploring a novel single-photon detectors array, the BrightEyes project will implement an optical system, able to continuously (i) track in real-time the biomolecule of interest from which to decode its dynamics and interactions; (ii) measure the nano-environment fluorescence spectroscopy properties, such as lifetime, photon-pair correlation and intensity, from which to extract the biochemical properties of the nano-environment, the structural properties of the biomolecule – via SM-FRET and anti-bunching – and the interactions of the biomolecule with other biomolecular species – via STED-FCS; (iii) visualize the sub-cellular structures within the micro-environment with sub-diffraction spatial resolution – via STED and image scanning microscopy. This unique paradigm will enable unprecedented studies of biomolecular behaviours, interactions and self-organization at near-physiological conditions.
Resourse | Description | Link |
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#BrightEyes_ERC (hashtag on twitter) | here | |
GitHub | BrightEyes Open-Source Time-Tagging Module | here |
Team members:
Andrea Bucci
Luca Bega
Marcus Oliver Held
Sanket Patil
Giorgio Tortarolo
Publications:
ALS-associated FUS mutation reshapes the RNA and protein composition of Stress Granules Davide Mariani, Adriano Setti, Francesco Castagnetti, Erika Vitiello, Lorenzo Stufera Mecarelli, Gaia di Timoteo, Andrea Giuliani, *Eleonora Perego*, *Sabrina Zappone*, Nara Liessi, Andrea Armirotti, *Giuseppe Vicidomini*, Irene Bozzoni Published in bioRxiv, January 2024 (see publication ) - Paper |
Compact and effective photon-resolved image scanning microscope *Giorgio Tortarolo*, *Alessandro Zunino*, *Simonluca Piazza*, *Mattia Donato*, *Sabrina Zappone*, Agnieszka Pierzyńska-Mach, *Marco Castello*, *Giuseppe Vicidomini* Published in Adv. Phot., January 2024 (see publication ) - Paper, Corresponding author |
Single-photon microscopy to study biomolecular condensates *Eleonora Perego*, *Sabrina Zappone*, Francesco Castagnetti, Davide Mariani, Erika Vitiello, Jakob Rupert, Elsa Zacco, Gian Gaetano Tartaglia, Irene Bozzoni, *Eli Slenders*, *Giuseppe Vicidomini * Published in Nat. Comm., December 2023 (see publication ) - Paper, Corresponding author |
M6A reduction relieves FUS-associated ALS granules Gaia Di Timoteo, Andrea Giuliani, Adriano Setti, Martina C. Biagi, Michela Lisi, Alessia Grandioso, Davide Mariani, Francesco Castagnetti, *Eleonora Perego*, *Sabrina Zappone*, *Giuseppe Vicidomini*, Dante Rotili, Mario Sabatelli, Serena Lattante, Irene Bozzoni Published in bioRxiv, October 2023 (see publication ) - Paper |
4D Single-Particle Tracking with Asynchronous Read-Out SPAD-Array Detector *Andrea Bucci*, *Giorgio Tortarolo*, *Marcus Oliver Held*, *Luca Bega*, *Eleonora Perego*, Francesco Castagnetti, Irene Bozzoni, *Eli Slenders*, *Giuseppe Vicidomini* Published in bioRxiv, August 2023 (see publication ) - Paper, Corresponding author |
Compact and effective photon-resolved image scanning microscope *Giorgio Tortarolo*, *Alessandro Zunino*, *Simonluca Piazza*, *Mattia Donato*, *Sabrina Zappone*, Agnieszka Pierzyńska-Mach, *Marco Castello*, *Giuseppe Vicidomini* Published in bioRxiv, July 2023 (see publication ) - Paper, Corresponding author |
Content-enriched fluorescence lifetime fluctuation spectroscopy to study bio-molecular condensate formation *Eleonora Perego*, *Sabrina Zappone*, Francesco Castagnetti, Davide Mariani, Erika Vitiello, Jakob Rupert, Elsa Zacco, Gian Gaetano Tartaglia, Irene Bozzoni, *Eli Slenders*, *Giuseppe Vicidomini* Published in bioRxiv, June 2023 (see publication ) - Paper, Corresponding author |
Open-source tools enable accessible and advanced image scanning microscopy data analysis *Alessandro Zunino*, *Eli Slenders*, *Francesco Fersini*, *Andrea Bucci*, *Mattia Donato*, *Giuseppe Vicidomini* Published in Nat. Photon., May 2023 (see publication ) - Paper, Corresponding author |
Reconstructing the Image Scanning Microscopy Dataset: an Inverse Problem *Alessandro Zunino*, *Marco Castello*, *Giuseppe Vicidomini* Published in Inverse Probl., April 2023 (see publication ) - Paper, Corresponding author |
ISM-FLUX: MINFLUX with an array detector *Eli Slenders*, *Giuseppe Vicidomini* Published in Phys. Rev. Research, April 2023 (see publication ) - Paper, Corresponding author |
Focus image scanning microscopy for sharp and gentle super-resolved microscopy *Giorgio Tortarolo*, *Alessandro Zunino*, *Francesco Fersini*, *Marco Castello*, *Simonluca Piazza*, Colin J.R. Sheppard, Paolo Bianchini, Alberto Diaspro, *Sami V. Koho*, *Giuseppe Vicidomini* Published in Nat. Comm., December 2022 (see publication ) - Paper, Corresponding author |
The BrightEyes-TTM as an open-source time-tagging module for democratising single-photon microscopy *Alessandro Rossetta*, *Eli Slenders*, *Mattia Donato*, *Sabrina Zappone*, *Francesco Fersini*, Martina Bruno, Francesco Diotalevi, Luca Lanzanò, *Sami V. Koho*, *Giorgio Tortarolo*, Andrea Barberis, Marco Crepaldi, *Eleonora Perego*, *Giuseppe Vicidomini* Published in Nat. Comm., December 2022 (see publication ) - Paper, Corresponding author |
Reconstructing the Image Scanning Microscopy Dataset: an Inverse Problem *Alessandro Zunino*, *Marco Castello*, *Giuseppe Vicidomini* Published in arXiv, November 2022 (see publication ) - Preprint, Corresponding author |
Focus-ISM for Sharp and Gentle Super-Resolved Microscopy *Giorgio Tortarolo*, *Alessandro Zunino*, *Francesco Fersini*, *Marco Castello*, *Simonluca Piazza*, Colin J.R. Sheppard, Paolo Bianchini, Alberto Diaspro, *Sami V. Koho*, *Giuseppe Vicidomini* Published in bioRxiv, April 2022 (see publication ) - Paper, Corresponding author |
ISM-FLUX: single-step MINFLUX with an array detector *Eli Slenders*, *Giuseppe Vicidomini* Published in bioRxiv, April 2022 (see publication ) - Paper, Corresponding author |
The BrightEyes-TTM: an Open-Source Time-Tagging Module for Single-Photon Microscopy *Alessandro Rossetta*, *Eli Slenders*, *Mattia Donato*, *Eleonora Perego*, Francesco Diotalevi, Luca Lanzanó, *Sami V. Koho*, *Giorgio Tortarolo*, Marco Crepaldi, *Giuseppe Vicidomini* Published in bioRxiv, October 2021 (see publication ) - Paper, Corresponding author |
Cooled SPAD array detector for low light-dose fluorescence laser scanning microscopy *Eli Slenders*, *Eleonora Perego*, Mauro Buttafava, *Giorgio Tortarolo*, Enrico Conca, *Sabrina Zappone*, Agnieszka Pierzynska-Mach, Federica Villa, Enrica Maria Petrini, Andrea Barberis, Alberto Tosi, *Giuseppe Vicidomini* Published in Biophys. Rep., September 2021 (see publication ) - Paper, Corresponding author |
Cooled SPAD array detector for low light-dose fluorescence laser scanning microscopy *Eli Slenders*, *Eleonora Perego*, Mauro Buttafava, *Giorgio Tortarolo*, Enrico Conca, *Sabrina Zappone*, Agnieszka Pierzynska-Mach, Federica Villa, Enrica Maria Petrini, Andrea Barberis, Alberto Tosi, *Giuseppe Vicidomini* Published in bioRxiv, August 2021 (see publication ) - Paper, Corresponding author |
Confocal-based fluorescence fluctuation spectroscopy with a SPAD array detector *Eli Slenders*, *Marco Castello*, Mauro Buttafava, Federica Villa, Alberto Tosi, Luca Lanzano, *Sami V. Koho*, *Giuseppe Vicidomini* Published in Light Sci. Appl., February 2021 (see publication ) - Paper, Corresponding author |
SPAD-based asynchronous-readout array detectors for image-scanning microscopy Mauro Buttafava, Federica Villa, *Marco Castello*, *Giorgio Tortarolo*, Enrico Conca, Mirko Sanzaro, *Simonluca Piazza*, Paolo Bianchini, Alberto Diaspro, Franco Zappa, *Giuseppe Vicidomini*, Alberto Tosi Published in Optica, July 2020 (see publication ) - Paper |
Two-photon image-scanning microscopy with SPAD array and blind image reconstruction *Sami V. Koho*, *Eli Slenders*, *Giorgio Tortarolo*, *Marco Castello*, Mauro Buttafava, Federica Villa, Elena Tcarenkova, Marcel Ameloot, Paolo Bianchini, Colin J.R. Sheppard, Albeto Diaspro, Alberto Tosi, *Giuseppe Vicidomini* Published in Biomed. Opt. Express, May 2020 (see publication ) - Paper, Corresponding author |
SPAD-based asynchronous-readout array detectors for image-scanning microscopy Mauro Buttafava, Federica Villa, *Marco Castello*, *Giorgio Tortarolo*, Enrico Conca, Mirko Sanzaro, *Simonluca Piazza*, Paolo Bianchini, Alberto Diaspro, Franco Zappa, *Giuseppe Vicidomini*, Alberto Tosi Published in arXiv, February 2020 (see publication ) - Preprint |